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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24662251_24663638_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24662251 - 24663638
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATATAT
5'SS Class:
major
3'SS Sequence:
CTTCCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATATTCTAAGCT
Flanking Amino Acid:
YICSLKDNALAKNGIQDMKC
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
72.3
33
Major BPS
80
0.75
1
78.6
31
Major PPT
86.5
0.82
0.7
84.5
23.3
Minor 5ss
39.8
-1.1
3.1
53.3
44.9
Minor BPS
54.6
0.22
1.9
74.84
41.9

Associated Gene:

Gene:
DCAF17
Ensembl Gene ID:
ENSAPLG00000003935
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004046
24649652 - 24667631
17980