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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24664865_24665966_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24664865 - 24665966
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CATACATGAACT
Flanking Amino Acid:
NLLDDDPEQETFKIVDYEDE
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
32.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
81
0.7
0.9
87.2
23.8
Minor 5ss
39.9
-1.1
3.3
57.8
46.8
Minor BPS
54.1
0.21
1.8
72.67
43.2

Associated Gene:

Gene:
DCAF17
Ensembl Gene ID:
ENSAPLG00000003935
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004046
24649652 - 24667631
17980