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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24666123_24666894_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24666123 - 24666894
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
SIPLLESWDVTYSHEVYFDR
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
82.4
29.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.9
0.85
0.7
85.8
27
Minor 5ss
34.1
-1.8
3.2
46.4
43
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
DCAF17
Ensembl Gene ID:
ENSAPLG00000003935
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004046
24649652 - 24667631
17980