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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24684911_24687440_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24684911 - 24687440
Intron Length:
2530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAATC
5'SS Class:
major
3'SS Sequence:
GTTTTGTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TTTCCCTAAAGC
Flanking Amino Acid:
LTAVIFYSLQLFLGFAVFLL
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.2
79
35.3
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
74.9
0.56
1
73.5
41.9
Minor 5ss
33.5
-1.9
2.9
43.7
43.5
Minor BPS
60.6
0.31
2
75.89
40.7

Associated Gene:

Gene:
CYBRD1
Ensembl Gene ID:
ENSAPLG00000003893
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003992
24677201 - 24688100
10900