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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24749389_24751404_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24749389 - 24751404
Intron Length:
2016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTCTCTGTGACA
Flanking Amino Acid:
KDLGLLGLYKGAKACFLRDI
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
74.9
0.56
1
71.7
38.2
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
58.5
0.26
2
73.69
38.7

Associated Gene:

Gene:
SLC25A12
Ensembl Gene ID:
ENSAPLG00000002863
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002912
24745893 - 24795436
49544