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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24759609_24762831_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24759609 - 24762831
Intron Length:
3223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
GTTGCCTTATGA
Flanking Amino Acid:
RFEGFFGLYRGLLPQLIGVA
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
84.6
0.86
1
74
41.2
Major PPT
85.1
0.79
0.7
80.9
31.3
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
53.2
0.1
2
67.76
44.7

Associated Gene:

Gene:
SLC25A12
Ensembl Gene ID:
ENSAPLG00000002863
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002912
24745893 - 24795436
49544