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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_2477812_2487643_R

Intron Information:

Intron Rank:
135291
Intron Class:
major
Intron Phase:
Intron Coordinates:
2477812 - 2487643
Intron Length:
9832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.4
38.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
91.8
0.94
0.7
93.4
22.6
Minor 5ss
28.6
-2.5
2.7
27.3
36.3
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020179
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020942
2476623 - 2549578
72956