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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24789587_24794980_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24789587 - 24794980
Intron Length:
5394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGGG
5'SS Class:
major
3'SS Sequence:
GTTTTTATTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTC
Flanking Amino Acid:
PAELRNIFLQYASVEKDGEH
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
60.4
44.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.9
0.72
0.8
74.7
40
Minor 5ss
35.1
-1.7
3.4
46.8
48.5
Minor BPS
60.6
0.31
1.5
68.94
37.7

Associated Gene:

Gene:
SLC25A12
Ensembl Gene ID:
ENSAPLG00000002863
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002912
24745893 - 24795436
49544