Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24812185_24815138_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24812185 - 24815138

Intron Length:

2954

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTATATG

5'SS Class:

major

3'SS Sequence:

TTTCTTTGTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TTATGTTCAAAC

Flanking Amino Acid:

VKRRLIGPYKKKQRELAKMR

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

72.9

37.8

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

88.3

0.86

0.8

88.2

29.1

Minor 5ss

39.3

-1.2

2.8

50.1

46.4

Minor BPS

48.8

-0.1

64.75

40.7

Associated Gene:

Gene:

HAT1

Ensembl Gene ID:

ENSAPLG00000002701

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002749

24798199 - 24815306

17108