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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24869187_24869316_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24869187 - 24869316
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCTGAT
5'SS Class:
major
3'SS Sequence:
GTGTGCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
TGCCCCCTGATA
Flanking Amino Acid:
KWTAISVDNKRSAQFEHTIV
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
68.6
38.4
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
70.8
0.47
1
62.7
39.7
Minor 5ss
33.4
-1.9
3.5
48.8
47.4
Minor BPS
50.5
0.01
1.7
61.54
38.4

Associated Gene:

Gene:
METAP1D
Ensembl Gene ID:
ENSAPLG00000002546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002575
24822735 - 24869619
46885