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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_2487712_2548038_R

Intron Information:

Intron Rank:
135292
Intron Class:
major
Intron Phase:
Intron Coordinates:
2487712 - 2548038
Intron Length:
60327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCCTCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.4
0.86
0.7
83.3
25.2
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
62.5
0.39
1.6
72.39
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020179
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020942
2476623 - 2549578
72956