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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24981617_24983502_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24981617 - 24983502
Intron Length:
1886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CACTTATTATCT
Flanking Amino Acid:
QSQGPGGSVVTCAHRYEKRL
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.2
0.75
0.9
77.5
36.5
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
49
0
1.9
65.5
45

Associated Gene:

Gene:
ITGA6
Ensembl Gene ID:
ENSAPLG00000015601
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044420
24963351 - 25004015
40665
ENSAPLT00000016338
24963351 - 25004136
40786