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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24988618_24988749_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24988618 - 24988749
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTACTTTCAACA
Flanking Amino Acid:
VGDINQDGYPDIAVGAPYDG
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
77.3
0.61
0.9
73.8
35.3
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
59.5
0.29
1.5
69.67
36.3

Associated Gene:

Gene:
ITGA6
Ensembl Gene ID:
ENSAPLG00000015601
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044420
24963351 - 25004015
40665
ENSAPLT00000016338
24963351 - 25004136
40786