Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24988839_24989577_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24988839 - 24989577

Intron Length:

739

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGAAG

5'SS Class:

major

3'SS Sequence:

GTTTGCTCTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

ATTCCCTCAATC

Flanking Amino Acid:

ESGINTEPAQILDGEKTGTN

Intron Amino Acid Position:

418

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.62

1.2

69.6

42.7

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

77.2

0.61

0.8

74.4

36.5

Minor 5ss

37.2

-1.5

3.1

47.8

47.9

Minor BPS

67.3

0.52

1.5

75.02

Associated Gene:

Gene:

ITGA6

Ensembl Gene ID:

ENSAPLG00000015601

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044420

24963351 - 25004015

40665

ENSAPLT00000016338

24963351 - 25004136

40786