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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24992067_24993706_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24992067 - 24993706
Intron Length:
1640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCATATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCCTTCTTAATA
Flanking Amino Acid:
ANPSNLNPRIKINYTFEAEK
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.3
0.7
0.8
77.5
30.2
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
74.4
0.76
1.2
74.1
38.6

Associated Gene:

Gene:
ITGA6
Ensembl Gene ID:
ENSAPLG00000015601
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016338
24963351 - 25004136
40786
ENSAPLT00000044420
24963351 - 25004015
40665