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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24996800_24996998_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24996800 - 24996998
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTACATATTT
Flanking Amino Acid:
LGNPFKRNSNVTFYLILSTT
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.2
35.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.2
0.59
0.9
69.5
36.8
Minor 5ss
43
-0.8
2.8
57.2
40.7
Minor BPS
50.4
0.09
2
76.61
39.8

Associated Gene:

Gene:
ITGA6
Ensembl Gene ID:
ENSAPLG00000015601
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044420
24963351 - 25004015
40665
ENSAPLT00000016338
24963351 - 25004136
40786