Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24999819_25000184_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24999819 - 25000184

Intron Length:

366

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAACTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

AAATTTTTAACT

Flanking Amino Acid:

LFSERKYKTLDCNVNARCVD

Intron Amino Acid Position:

924

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

73.3

37.4

Major BPS

87.3

0.93

0.8

36.5

Major PPT

84.7

0.78

0.8

79.3

32.8

Minor 5ss

39.8

-1.1

2.8

42.5

Minor BPS

73.6

0.82

1.1

80.1

35.3

Associated Gene:

Gene:

ITGA6

Ensembl Gene ID:

ENSAPLG00000015601

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044420

24963351 - 25004015

40665

ENSAPLT00000016338

24963351 - 25004136

40786