Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25012839_25016029_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25012839 - 25016029

Intron Length:

3191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

TATTTGGTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTATTCTAATG

Flanking Amino Acid:

PLSMKQFLDFGSENACEKTS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

66.2

39.6

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

71.8

0.49

0.9

69.7

41.2

Minor 5ss

30.5

-2.2

2.8

37.9

39.5

Minor BPS

53.6

-0

1.7

64.05

38.4

Associated Gene:

Gene:

PDK1

Ensembl Gene ID:

ENSAPLG00000015342

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016018

25012721 - 25024671

11951