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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25016172_25017676_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25016172 - 25017676
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCGTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCGTTTAAAG
Flanking Amino Acid:
RTPSVQLVQSWYVQSLQEIL
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
74.1
0.54
1
74.1
34.5
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
55
0.02
1.9
65.96
41.8

Associated Gene:

Gene:
PDK1
Ensembl Gene ID:
ENSAPLG00000015342
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016018
25012721 - 25024671
11951