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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25018443_25018685_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25018443 - 25018685
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTTGTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTAAATAATA
Flanking Amino Acid:
ISIRMLLNQHSLLFGGKINP
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
72.2
37.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
79
0.65
1
76.3
37.7
Minor 5ss
38.2
-1.3
3.4
60.6
43.7
Minor BPS
49.3
-0
2
68.33
37.2

Associated Gene:

Gene:
PDK1
Ensembl Gene ID:
ENSAPLG00000015342
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016018
25012721 - 25024671
11951