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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25018776_25019096_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25018776 - 25019096
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCCA
5'SS Class:
strong_major
3'SS Sequence:
AAATTTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAT
Flanking Amino Acid:
PSCNVVEVIRDGYESAKRLC
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
74
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.8
0.44
1
63.2
41.9
Minor 5ss
33.9
-1.8
2.9
42.4
44.3
Minor BPS
73.6
0.82
1.3
85.52
34.2

Associated Gene:

Gene:
PDK1
Ensembl Gene ID:
ENSAPLG00000015342
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016018
25012721 - 25024671
11951