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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25024411_25024530_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25024411 - 25024530
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTTCTCTACTT
Flanking Amino Acid:
YGTDAVIYIKALSTESIERL
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.2
37.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
83.2
0.75
0.8
76.7
30.9
Minor 5ss
45.8
-0.4
2.9
65.2
46
Minor BPS
54
0.2
1.9
75.83
41.7

Associated Gene:

Gene:
PDK1
Ensembl Gene ID:
ENSAPLG00000015342
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016018
25012721 - 25024671
11951