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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25031552_25035938_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25031552 - 25035938
Intron Length:
4387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCAATTGGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTTTCTCAATT
Flanking Amino Acid:
SHTLTFSSNEALDDEFTTTG
Intron Amino Acid Position:
1248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
55.7
0.13
1.1
49.8
43.5
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
69.7
0.7
1.5
83.48
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015004
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015688
25028915 - 25068443
39529