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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25036056_25040997_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25036056 - 25040997
Intron Length:
4942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
CACTTGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATTATTTCCACT
Flanking Amino Acid:
EHGQEKNRSKSRVVIDDTYH
Intron Amino Acid Position:
1209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
78.5
0.64
0.9
72.2
37.5
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
47.7
-0.1
2
70.7
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015004
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015688
25028915 - 25068443
39529