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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25053618_25055157_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25053618 - 25055157
Intron Length:
1540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATTAG
5'SS Class:
major
3'SS Sequence:
TTGTATATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATGAATT
Flanking Amino Acid:
SAQSLLKFKELQLKHAVTVA
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70
36.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
81.1
0.7
0.9
78.3
39.6
Minor 5ss
45
-0.5
2.6
57.3
47.4
Minor BPS
59.5
0.38
1.7
76.66
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015004
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043316
25028915 - 25068443
39529
ENSAPLT00000015688
25028915 - 25068443
39529