About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25070378_25074383_R

Intron Information:

Intron Rank:
135332
Intron Class:
major
Intron Phase:
Intron Coordinates:
25070378 - 25074383
Intron Length:
4006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
TATTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATTTTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
89.8
0.9
0.7
84.5
30.1
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
58.7
0.13
1.8
66.56
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020218
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032061
25069461 - 25078280
8820