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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25262072_25263953_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25262072 - 25263953
Intron Length:
1882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCCCTTTTCATT
Flanking Amino Acid:
RDRKYHLKTYRQCCVGTELV
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.1
35.9
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.8
78.5
35.5
Minor 5ss
32.7
-2
3.1
39.1
46.7
Minor BPS
48.6
-0
1.7
63.63
42

Associated Gene:

Gene:
RAPGEF4
Ensembl Gene ID:
ENSAPLG00000013981
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014632
25146577 - 25316158
169582