Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25264076_25265543_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25264076 - 25265543

Intron Length:

1468

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

TAGTGTTTGATA

Flanking Amino Acid:

VLLEEGVLNHVDQEHYFQDK

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.4

0.95

0.8

85.9

25.4

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

89.6

0.89

0.7

87.9

29.4

Minor 5ss

43.9

-0.7

2.8

43.6

Minor BPS

52.2

0.06

1.8

62.11

38.9

Associated Gene:

Gene:

RAPGEF4

Ensembl Gene ID:

ENSAPLG00000013981

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014632

25146577 - 25316158

169582