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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25275112_25275854_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25275112 - 25275854
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ATATTCTCACCA
Flanking Amino Acid:
FESHPKAGTVLFNQGEEGTS
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
87.6
0.85
0.6
84.4
23.5
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
53.1
0.09
1.8
66.61
39.7

Associated Gene:

Gene:
RAPGEF4
Ensembl Gene ID:
ENSAPLG00000013981
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014632
25146577 - 25316158
169582