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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25281844_25283786_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25281844 - 25283786
Intron Length:
1943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGAC
5'SS Class:
major
3'SS Sequence:
TCTCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
TGTGGCTTAATT
Flanking Amino Acid:
RLEVTLNEATDSALNDFIMM
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.3
35.7
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
87
0.83
0.7
82.8
25.8
Minor 5ss
31.3
-2.1
3.4
43
44.6
Minor BPS
63.6
0.51
1.9
80.32
42.1

Associated Gene:

Gene:
RAPGEF4
Ensembl Gene ID:
ENSAPLG00000013981
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014632
25146577 - 25316158
169582