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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25289754_25290172_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25289754 - 25290172
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGCACA
5'SS Class:
major
3'SS Sequence:
TACCTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TATGTTTTACCT
Flanking Amino Acid:
LPELEKIVKQVSEEPKAPQK
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
64.5
41.4
Major BPS
76.8
0.67
1
66
40.9
Major PPT
80.7
0.69
0.8
76
32.3
Minor 5ss
41.7
-0.9
2.8
51
45.2
Minor BPS
58.5
0.35
1.7
75.92
41.3

Associated Gene:

Gene:
RAPGEF4
Ensembl Gene ID:
ENSAPLG00000013981
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014632
25146577 - 25316158
169582