About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25290516_25292906_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25290516 - 25292906
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAGCAC
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
KRQPIRGSDEVLFKVYCIDQ
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
47.8
-0.1
1.4
57.5
39.1
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
RAPGEF4
Ensembl Gene ID:
ENSAPLG00000013981
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014632
25146577 - 25316158
169582