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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25297572_25298054_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25297572 - 25298054
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
AACAAACAAACT
Flanking Amino Acid:
DWELFNCVHELELIYHTFGR
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
85.5
0.8
0.6
80.4
31.6
Minor 5ss
38.9
-1.2
2.8
49.3
46.5
Minor BPS
37.1
-0.9
2.1
51.7
41.7

Associated Gene:

Gene:
RAPGEF4
Ensembl Gene ID:
ENSAPLG00000013981
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014632
25146577 - 25316158
169582