About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25298234_25302867_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25298234 - 25302867
Intron Length:
4634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TACAACTTAAAT
Flanking Amino Acid:
LLKKYIKIAAHCKEYKNLNS
Intron Amino Acid Position:
827

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
58
0.33
1.7
72.75
43.2

Associated Gene:

Gene:
RAPGEF4
Ensembl Gene ID:
ENSAPLG00000013981
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014632
25146577 - 25316158
169582