Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25302959_25314423_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25302959 - 25314423

Intron Length:

11465

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTGCAT

U12 Branch Point Sequence:

TGTTCCCTGATT

Flanking Amino Acid:

AVSRLSLTWERMIANTVRTV

Intron Amino Acid Position:

858

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.2

1.11

0.7

90.9

28.7

Major BPS

66.2

0.4

1.4

77.4

37.3

Major PPT

91.7

0.94

0.6

84.4

30.5

Minor 5ss

40.2

-1.1

3.1

58.6

45.9

Minor BPS

0.65

1.6

84.98

35.2

Associated Gene:

Gene:

RAPGEF4

Ensembl Gene ID:

ENSAPLG00000013981

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014632

25146577 - 25316158

169582