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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25332418_25332502_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25332418 - 25332502
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTTGTT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.2
70.4
39.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
34
-1.8
3.4
50.6
45.7
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
MAP3K20
Ensembl Gene ID:
ENSAPLG00000013963
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014547
25332394 - 25391025
58632