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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25332693_25356047_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25332693 - 25356047
Intron Length:
23355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTGTTTTCAACA
Flanking Amino Acid:
VKKLLKIEKEAEILSVLSHK
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.7
0.69
0.9
77.7
35.5
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
66.1
0.5
1.5
74.78
37.2

Associated Gene:

Gene:
MAP3K20
Ensembl Gene ID:
ENSAPLG00000013963
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014547
25332394 - 25391025
58632