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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25361717_25362735_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25361717 - 25362735
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
TTTTCATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
VIHRDLKSRNVVIAADGVLK
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
61.6
39.4
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
85.9
27.3
Minor 5ss
35.6
-1.6
3.4
42.7
46.8
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
MAP3K20
Ensembl Gene ID:
ENSAPLG00000013963
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014547
25332394 - 25391025
58632