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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25362765_25362860_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25362765 - 25362860
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTGCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATCTGTTTATTT
Flanking Amino Acid:
VVIAADGVLKICDFGASRFH
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.5
0.71
1
77.1
41.8
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
49.6
0.05
2
69.31
42.7

Associated Gene:

Gene:
MAP3K20
Ensembl Gene ID:
ENSAPLG00000013963
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014547
25332394 - 25391025
58632