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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25386278_25390653_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25386278 - 25390653
Intron Length:
4376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTCCTTTAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCTCCTTTAAAT
Flanking Amino Acid:
QKLTEQSNTPFFLPLAARMS
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68
0.41
0.9
65.6
33.8
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
64.5
0.53
1.5
74.3
42.6

Associated Gene:

Gene:
MAP3K20
Ensembl Gene ID:
ENSAPLG00000013963
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014547
25332394 - 25391025
58632