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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25398370_25398489_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25398370 - 25398489
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTATCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GATTTCTGAATA
Flanking Amino Acid:
FLWMQQLTRKGDASGEMSVY
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
31.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72
0.5
1
75.8
32
Minor 5ss
39.9
-1.1
3.2
57.4
46.8
Minor BPS
64.8
0.46
1.4
70.12
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008686
25397203 - 25417114
19912