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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25398630_25399856_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25398630 - 25399856
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTACT
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTTTTTTATAG
Flanking Amino Acid:
VARGHIIHLKTAIEKLTHDY
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77.1
37.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
91
0.92
0.6
87.6
22.9
Minor 5ss
50.1
0.01
2.2
70
40.2
Minor BPS
58.2
0.12
1.7
67.78
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008686
25397203 - 25417114
19912