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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25410432_25411943_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25410432 - 25411943
Intron Length:
1512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTACA
5'SS Class:
major
3'SS Sequence:
ATGTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CCTTGTAAAATT
Flanking Amino Acid:
PDVEILKMTKPPFVMEKWIV
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
75.2
34
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.8
0.74
0.8
81.7
35.4
Minor 5ss
42.2
-0.9
2.4
52.6
43.9
Minor BPS
42.3
-0.5
2.2
59.42
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008686
25397203 - 25417114
19912