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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25432881_25433221_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25432881 - 25433221
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTTCATTATTC
Flanking Amino Acid:
RRTMSDEYMEHDAQTPRRGH
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
79.4
0.66
0.9
77.2
35.7
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
58.8
0.26
1.9
71.26
40.4

Associated Gene:

Gene:
CDCA7
Ensembl Gene ID:
ENSAPLG00000008313
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008657
25431912 - 25434994
3083