Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25434646_25434963_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25434646 - 25434963

Intron Length:

318

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCATG

5'SS Class:

strong_major

3'SS Sequence:

ACTTGTCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATAAA

U12 Branch Point Sequence:

TTTGCTATAAAC

Flanking Amino Acid:

GYDNVHAYLKSLKHELGMED

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.7

0.96

0.8

81.8

38.5

Major BPS

66.3

0.4

1.1

34.4

Major PPT

81.1

0.7

0.9

77.4

36.3

Minor 5ss

-0.8

2.9

56.9

47.4

Minor BPS

56.8

0.19

1.8

72.43

38.5

Associated Gene:

Gene:

CDCA7

Ensembl Gene ID:

ENSAPLG00000008313

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008657

25431912 - 25434994

3083