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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25548232_25557243_R

Intron Information:

Intron Rank:
130076
Intron Class:
major
Intron Phase:
Intron Coordinates:
25548232 - 25557243
Intron Length:
9012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCCTCATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
89.1
0.88
0.7
84.2
30.7
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
48.2
-0
2.1
67.57
48.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017195
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043132
25537465 - 25557281
19817