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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25654705_25665772_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25654705 - 25665772
Intron Length:
11068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTACT
5'SS Class:
major
3'SS Sequence:
TTCTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TACTTATGGATC
Flanking Amino Acid:
HQGENAGSPADIRIKEEEPD
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79
34.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.4
0.86
0.6
88.2
21.6
Minor 5ss
44.5
-0.6
2.5
61.4
42.8
Minor BPS
46.3
-0.3
1.7
55.61
36.7

Associated Gene:

Gene:
SP3
Ensembl Gene ID:
ENSAPLG00000008201
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008519
25644478 - 25678997
34520