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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25667136_25678210_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25667136 - 25678210
Intron Length:
11075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTATTC
Flanking Amino Acid:
AAAASHSAGATGDLASVQLA
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.9
0.88
0.7
88.7
27.1
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
60.5
0.31
1.5
68.82
37.9

Associated Gene:

Gene:
SP3
Ensembl Gene ID:
ENSAPLG00000008201
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008519
25644478 - 25678997
34520