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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25678649_25678990_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25678649 - 25678990
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGTACG
5'SS Class:
major
3'SS Sequence:
GCTGCGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
TCTCCCCTCCCC
Flanking Amino Acid:
MTAPEKPVKQEE
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
66.8
44.4
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
62.5
0.28
0.9
54
36.6
Minor 5ss
35.5
-1.7
2.9
44
43.2
Minor BPS
36.6
-1
3.7
60.47
44.7

Associated Gene:

Gene:
SP3
Ensembl Gene ID:
ENSAPLG00000008201
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008519
25644478 - 25678997
34520