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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25716220_25720286_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25716220 - 25720286
Intron Length:
4067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TCTGTTGTATTT
Flanking Amino Acid:
KEGGSEAAVKAAGKYRQQGR
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
67.7
0.44
1
58
38.9
Major PPT
80.4
0.68
0.9
73.8
40.8
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
43.3
-0.4
2.2
61.8
43.8

Associated Gene:

Gene:
OLA1
Ensembl Gene ID:
ENSAPLG00000008147
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008490
25716118 - 25812294
96177